PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.G00085.1.p
Common NameEUGRSUZ_G00085, LOC104452473
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 680aa    MW: 78220 Da    PI: 7.7173
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.G00085.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.41.8e-2162155190
              FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 
                       +fY+e+Ak++GFs+r+++++ +    +  t+r fvC + g++  ++++++k +r+r+++r+gC+a ++++k++     +w+vt ++++HnHel
  Eucgr.G00085.1.p  62 EFYSEFAKQCGFSIRRHRTEGKeGVGKGLTRRYFVCHRAGNTPVKTTNESKPQRNRKSSRCGCQAYMRISKTTdlgAPEWRVTGFVNHHNHEL 154
                       6**************9998876356667999***************99999********************99887789*************9 PP

              FAR1  90 a 90 
                        
  Eucgr.G00085.1.p 155 L 155
                       6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1862155IPR004330FAR1 DNA binding domain
PfamPF105515.7E-20278369IPR018289MULE transposase domain
PROSITE profilePS509669.297556589IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-6559587IPR007527Zinc finger, SWIM-type
SMARTSM005755.4E-5564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MSIGSGQMLV VYDDPSDQHS FSLDDNSSAE ESLDETRLSL ESTNETVPYI GQRFDTHDAA  60
YEFYSEFAKQ CGFSIRRHRT EGKEGVGKGL TRRYFVCHRA GNTPVKTTNE SKPQRNRKSS  120
RCGCQAYMRI SKTTDLGAPE WRVTGFVNHH NHELLEPNQV RFLPAYRTIS DTDKSRILMF  180
AKTGISIQQM MRLMELEKCV EPGYLPFTEK DVRNLLQSFR KIDPEDESTD LLRMCRNIKE  240
KDPNFRFEYT LDSNNGLENI AWSYASSIQS YEIFGDAVVF DTTHRLTAFD MPLGLWVGIN  300
NYGMPCFFGC VLMREENLRS YSWALKVFLG FMNGKPPQTI LTDQNMCLKE AISMEMQTTK  360
HALCIWMIVA KFPSWFNAVL GERYNEWKSE FYRLYNTESI EEFEIGWKEM QNFFGLHSNR  420
HIINLFALRA YWALPYLRNY FFAGMTSPGQ SKSINSFIQR FLSAQTRLAH FVEQVAVAVD  480
FKDQAGEQQT MQQNLQNISL KTGAPMESHA ATVLTPFAFS KLQEQLVLAA HYASFQMEDG  540
FLVRHHTKLE GGRKVYWIPR EGIISCSCHL FEFSGILCRH SLRVLSTGNC FQIPDKYLPL  600
RWRKISTSSS KLPHNTPSDH AERLQFLQSM VSNLMSESAK SKERLELATE QVSILLSRIR  660
EQPVSSLVLR DAASIHRNF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.G00085.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065254.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A059B9M90.0A0A059B9M9_EUCGR; Uncharacterized protein
STRINGPOPTR_0004s23620.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11